AbstractsBiology & Animal Science

Phylogeny and evolutionary perspective of Opisthokonta protists

by Guifré Torruella i Cortés




Institution: Universitat de Barcelona
Department:
Year: 2014
Keywords: Genòmica; Genómica; Genomics; Filogènia; Filogenia; Phylogeny; Evolució (Biologia); Evolución (Biología); Evolution (Biology); Opistocont; Opistoconta; Opisthokont; Ciències Experimentals i Matemàtiques
Record ID: 1126827
Full text PDF: http://hdl.handle.net/10803/286509


Abstract

To understand the origin of opisthokonts or infer evolutionary transitions within the group that contains two multicellular lineages (animals and fungi), it is first fundamental to understand the phylogenetic relationships between extant living species. Phylogeny and particularly phylogenomics (such the supermatrix approach) is the only valid procedure to infer evolutionary relationships between species, as morphological or molecular synapomorphies or rare genomic changes are cyclic arguments and really taxon dependent. This is why we have used genomic and transcriptomic data to build a novel dataset of Single Copy Protein Domains and test phylogenetic hypotheses with multiple methods to discard problems of systematic error. We have confirmed the division between Holomycota (Nucleariids, Opisthosporidia, chytrid fungi and fungi) and Holozoa (Ichthyosporea, Filasterea, Choanomonada and Metazoa). We also have generated RNAseq data to place a specially elusive species: Corallochytrium limacisporum and found it placed as sister group to Ichthyosporea, another osmotrophic holozoan group. With this solid phylogenetic background we can start to speculate on evolutionary transitions between groups, but not before reconstructing ancestral character states in different opisthokont lineages and also the extant living outgroups: Apusomonadida and Breviatea. So we conclude that there is no clear link between biflagellated free-living gliding bacterivores (outgroup) and any opisthokont lineage (ingroup). The Last Opisthokont Common Ancestor was probably uniflagellated but retained all other ancestral characters such amoeboid movement, filopodia, phagotrophy, etc. but had a less constrained cell shape or feeding mode. Then, we studied the similarities found between non-related groups of opisthokonts, such the walled osmotrophs or the naked filose amoebae through comparative genomics. For example, we found that Ministeria vibrans (Filasterea) and C. limacisporum (Ichthyosporea) have a flagellar apparatus previously unnoticed, and with a molecular pattern of flagellum reduction also seen in fungi and other eukaryotes. Also, Ichthyosporea probably use a chitin-like substance to build their cell wall (similar to fungi) but with an independently diversified pathway.; Per entendre l’origen dels Opistoconts (grup taxonòmic que conté animals, fongs i diversos llinatges protists emparentats) o inferir les seves transicions evolutives, és fonamental primer entendre les relacions filogenètiques entre les espècies existents en l’actualitat. La filogènia, particularment la filogenòmica, és el procediment vàlid per inferir relacions evolutives entre espècies, ja que la morfologia, les sinapomorfies moleculars o els canvis genètics singulars són arguments cíclics dependents del mostreig taxonòmic. Per aquesta raó hem fet servir dades genòmiques i transcriptòmiques per a construir un nou conjunt de dades format per dominis proteics de còpia única i els hem analitzat mitjançat diversos mètodes per prevenir errors sistemàtics. Hem pogut així…